| Protein ZmOrphan179 | |
|---|---|
|
ZmOrphan179 is a protein in the Orphans family.
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| Information | |
| Orphans Name: | ZmOrphan179 |
| Species: | Maize |
| Orphans Family: | Orphans |
| Gene Name(Synonym): | DBB4 |
| Uniprot ID: | B4FXI0 |
| Subgenome: | 2 |
Protein ZmOrphan179
ZmOrphan179 is a protein in the Orphans family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF00643 | |
| Zm00001eb184110_T001 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d051018 | DAPseq |  |
sequence | fimo | position |
| Zm00001d051018 | DAPseq |  |
sequence | fimo | position |
| Zm00001d051018 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d051018 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmOrphan179 is the regulator
Interactions where ZmOrphan179 is the target
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Zm00001eb184110_T001 from maize genome v5
Amino Acid Sequence
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MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSASLPRCDVCQEKAAFIFCVEDRALFCRDC
DEPIHVPGTLSGNHQRYLATDIRVGFASASSACSDACDAHDDSDHHAPPKAAVSSAAQQVPSPPQFLPQGWAVDELLQFS
DCESSDKLHKESPLGFKELEWFTDIDLFHEQTPKAGRRLAEVPELSGTQAANDAAYYRPAKATATAGAGVRQSKKARTEV
TDDEDHLIVPDLG
MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSASLPRCDVCQEKAAFIFCVEDRALFCRDC
DEPIHVPGTLSGNHQRYLATDIRVGFASASSACSDACDAHDDSDHHAPPKAAVSSAAQQVPSPPQFLPQGWAVDELLQFS
DCESSDKLHKESPLGFKELEWFTDIDLFHEQTPKAGRRLAEVPELSGTQAANDAAYYRPAKATATAGAGVRQSKKARTEV
TDDEDHLIVPDLG
MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSASLPRCDVCQEKAAFIFCVEDRALFCRDC
DEPIHVPGTLSGNHQRYLATDIRVGFASASSACSDACDAHDDSDHHAPPKAAVSSAAQQVPSPPQFLPQGWAVDELLQFS
DCESSDKLHKESPLGFKELEWFTDIDLFHEQTPKAGRRLAEVPELSGTQAANDAAYYRPAKATATAGAGVRQSKKARTEV
TDDEDHLIVPDLG
MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSASLPRCDVCQEKAAFIFCVEDRALFCRDC
DEPIHVPGTLSGNHQRYLATDIRVGFASASSACSDACDAHDDSDHHAPPKAAVSSAAQQVPSPPQFLPQGWAVDELLQFS
DCESSDKLHKESPLGFKELEWFTDIDLFHEQTPKAGRRLAEVPELSGTQAANDAAYYRPAKATATAGAGVRQSKKARTEV
TDDEDHLIVPDLG
MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSASLPRCDVCQEKAAFIFCVEDRALFCRDC
DEPIHVPGTLSGNHQRYLATDIRVGFASASSACSDACDAHDDSDHHAPPKAAVSSAAQQVPSPPQFLPQGWAVDELLQFS
DCESSDKLHKESPLGFKELEWFTDIDLFHEQTPKAGRRLAEVPELSGTQAANDAAYYRPAKATATAGAGVRQSKKARTEV
TDDEDHLIVPDLG
MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSASLPRCDVCQEKAAFIFCVEDRALFCRDC
DEPIHVPGTLSGNHQRYLATDIRVGFASASSACSDACDAHDDSDHHAPPKAAVSSAAQQVPSPPQFLPQGWAVDELLQFS
DCESSDKLHKESPLGFKELEWFTDIDLFHEQTPKAGRRLAEVPELSGTQAANDAAYYRPAKATATAGAGVRQSKKARTEV
TDDEDHLIVPDLG
MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSASLPRCDVCQEKAAFIFCVEDRALFCRDC
DEPIHVPGTLSGNHQRYLATDIRVGFASASSACSDACDAHDDSDHHAPPKAAVSSAAQQVPSPPQFLPQGWAVDELLQFS
DCESSDKLHKESPLGFKELEWFTDIDLFHEQTPKAGRRLAEVPELSGTQAANDAAYYRPAKATATAGAGVRQSKKARTEV
TDDEDHLIVPDLG
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF00643 |
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| PF00643 |
|
| PF00643 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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GCCAACTAAAGCTCTTACGGCCAGG...
GCCAACTAAAGCTCTTACGGCCAGGCCATCATCCCGTTCCGCCGAGTGAGCACATCACATCAGATCAAAATCGGCGCGTCCAAGCGTGGTTCCGGCGTGTAGCTAGTACACGGGGAGACGAGCCGGGAGCCCCTGGCCACAAGTCTCCCCGGCGAGTCCTCCACCACAAGCTCGCCCGGCAGCGGCAGCTCACTGATTGCTCCAGTTGCGTGCTCGCGCGCGCAAGCTCGTCCTCCTCCATCGCAGTCGGTGGCCTTATCTTGTTCGTCCTTGCCTCCCTCGTTGTTGCGACTTGCGAGACGACAGGACAGGATAGCGAGCTGGGCCTGGGAGTATAGACCGCAGACAGAGAGGTGGAGCGGCCATGAAGATCCAGTGCGACGCGTGCGAGGGCGCGGCTGCCACCGTGGTGTGCTGCGCCGACGAGGCCGCGCTGTGCGCGCGCTGCGACGTCGAGATCCACGCCGCCAACAAGCTCGCCAGCAAGCACCAGCGCCTCCCGCTCGAGGCTCTCTCCGCCAGCCTCCCGCGCTGCGACGTCTGCCAGGAGAAAGCGGCGTTCATCTTCTGCGTGGAGGACCGGGCGCTCTTCTGCCGGGACTGCGACGAGCCCATCCACGTCCCGGGCACGCTCTCCGGGAACCACCAGCGCTACCTCGCCACCGACATCCGCGTCGGCTTCGCCTCCGCTTCGTCAGCGTGCAGTGACGCCTGCGACGCCCACGACGACTCCGACCACCACGCCCCGCCCAAGGCCGCCGTCTCCTCCGCGGCGCAGCAGGTGCCCTCGCCGCCGCAGTTCCTGCCACAGGGCTGGGCCGTCGACGAGCTCCTGCAGTTCTCCGACTGCGAGTCCAGCGACAAGCTGCACAAGGAGTCCCCGCTCGGGTTCAAGGAGCTGGAGTGGTTCACCGACATCGACCTCTTCCACGAGCAGACGCCGAAAGCCGGCAGGAGATTGGCTGAGGTACCGGAGCTTTCCGGAACCCAGGCCGCGAACGACGCGGCGTACTACAGGCCAGCCAAAGCCACTGCCACTGCCGGCGCCGGGGTGCGCCAGAGCAAGAAGGCCCGGACCGAGGTCACCGACGACGAGGACCACCTCATCGTCCCTGATCTCGGCTAAAATAAAAGAAAGGGCAGGAGTTTTGTTTCTTCTCCTGCTGTGTGTACAACCAGTGTCGTGTCGTGCATCTTTGACTGTAGTATTGCACAGCTGTGAACATGATAACTCTAAGCACACTTTGTGTCTTTGTTGCTACGCTAGTCTATACTATACTTAAAGCACCAGTTTCAACGGTCGTCATGCGTCA
GRMZM2G019335_T01 from maize genome v3
Amino Acid Sequence
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MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSASLPRCDVCQEKAAFIFCVEDRALFCRDC
DEPIHVPGTLSGNHQRYLATDIRVGFASASSACSDACDAHDDSDHHAPPKAAVSSAAQQVPSPPQFLPQGWAVDELLQFS
DCESSDKLHKESPLGFKELEWFTDIDLFHEQTPKAGRRLAEVPELSGTQAANDAAYYRPAKATATAGAGVRQSKKARTEV
TDDEDHLIVPDLG
Nucleotide Sequence
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CATCATCCCGTTCCGCCGAGTGAGC...
CATCATCCCGTTCCGCCGAGTGAGCACATCACATCAGATCAAAATCGGCGCGTCCAAGCGTGGTTCCGGCGTGTAGCTAGTACACGGGGAGACGAGCCGGGAGCCCCTGGCCACAAGTCTCCCCGGCGAGTCCTCCACCACAAGCTCGCCCGGCAGCGGCAGCTCACTGATTGCTCCAGTTGCGTGCTCGCGCGCGCAAGCTCGTCCTCCTCCATCGCAGTCGGTGGCCTTATCTTGTTCGTCCTTGCCTCCCTCGTTGTTGCGACTTGCGAGACGACAGGACAGGATAGCGAGCTGGGCCTGGGAGTATAGACCGCAGACAGAGAGGTGGAGCGGCCATGAAGATCCAGTGCGACGCGTGCGAGGGCGCGGCTGCCACCGTGGTGTGCTGCGCCGACGAGGCCGCGCTGTGCGCGCGCTGCGACGTCGAGATCCACGCCGCCAACAAGCTCGCCAGCAAGCACCAGCGCCTCCCGCTCGAGGCTCTCTCCGCCAGCCTCCCGCGCTGCGACGTCTGCCAGGAGAAAGCGGCGTTCATCTTCTGCGTGGAGGACCGGGCGCTCTTCTGCCGGGACTGCGACGAGCCCATCCACGTCCCGGGCACGCTCTCCGGGAACCACCAGCGCTACCTCGCCACCGACATCCGCGTCGGCTTCGCCTCCGCTTCGTCAGCGTGCAGTGACGCCTGCGACGCCCACGACGACTCCGACCACCACGCCCCGCCCAAGGCCGCCGTCTCCTCCGCGGCGCAGCAGGTGCCCTCGCCGCCGCAGTTCCTGCCACAGGGCTGGGCCGTCGACGAGCTCCTGCAGTTCTCCGACTGCGAGTCCAGCGACAAGCTGCACAAGGAGTCCCCGCTCGGGTTCAAGGAGCTGGAGTGGTTCACCGACATCGACCTCTTCCACGAGCAGACGCCGAAAGCCGGCAGGAGATTGGCTGAGGTACCGGAGCTTTCCGGAACCCAGGCCGCGAACGACGCGGCGTACTACAGGCCAGCCAAAGCCACTGCCACTGCCGGCGCCGGGGTGCGCCAGAGCAAGAAGGCCCGGACCGAGGTCACCGACGACGAGGACCACCTCATCGTCCCTGATCTCGGCTAAAATAAAAGAAAGGGCAGGAGTTTTGTTTCTTCTCCTGCTGTGTGTACAACCAGTGTCGTGTCGTGCATCTTTGACTGTAGTATTGCACAGCTGTGAACATGATAACTCTAAGCACACTTTGTGTCTTTGTTGCTACGCTAGTCTATACTATACTTAAAGCACCAGTTTCAACGGTCGTCA
GRMZM2G019335_T02 from maize genome v3
Amino Acid Sequence
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MTNNLPACTHRLMHGLVCVCVLQLHKESPLGFKELEWFTDIDLFHEQTPKAGRRLAEVPELSGTQAANDAAYYRPAKATA
TAGAGVRQSKKARTEVTDDEDHLIVPDLG
Nucleotide Sequence
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GTGTAGCTAGTACACGGGGAGACGA...
GTGTAGCTAGTACACGGGGAGACGAGCCGGGAGCCCCTGGCCACAAGTCTCCCCGGCGAGTCCTCCACCACAAGCTCGCCCGGCAGCGGCAGCTCACTGATTGCTCCAGTTGCGTGCTCGCGCGCGCAAGCTCGTCCTCCTCCATCGCAGTCGGTGGCCTTATCTTGTTCGTCCTTGCCTCCCTCGTTGTTGCGACTTGCGAGACGACAGGACAGGATAGCGAGCTGGGCCTGGGAGTATAGACCGCAGACAGAGAGGTGGAGCGGCCATGAAGATCCAGTGCGACGCGTGCGAGGGCGCGGCTGCCACCGTGGTGTGCTGCGCCGACGAGGCCGCGCTGTGCGCGCGCTGCGACGTCGAGATCCACGCCGCCAACAAGCTCGCCAGCAAGCACCAGCGCCTCCCGCTCGAGGCTCTCTCCGCCAGCCTCCCGCGCTGCGACGTCTGCCAGGTACGTACATCACCAGCGCATTGCGCATGCGCCACACGCGGCACAAGGCAGGCAGGCACGAGCTAACAACGAGGCCACCACCCCGCCCCGCGCGCGCTCGCAGGAGAAAGCGGCGTTCATCTTCTGCGTGGAGGACCGGGCGCTCTTCTGCCGGGACTGCGACGAGCCCATCCACGTCCCGGGCACGCTCTCCGGGAACCACCAGCGCTACCTCGCCACCGACATCCGCGTCGGCTTCGCCTCCGCTTCGTCAGCGTGCAGTGACGCCTGCGACGCCCACGACGACTCCGACCACCACGCCCCGCCCAAGGCCGCCGTCTCCTCCGCGGCGCAGCAGGTGCCCTCGCCGCCGCAGTTCCTGCCACAGGGCTGGGCCGTCGACGAGCTCCTGCAGTTCTCCGACTGCGAGTCCAGCGACAAGGCAAGACGATAGCGCAAGCTCCGGTCCATGACCAACAACCTGCCTGCGTGCACCCACCGTCTCATGCATGGTCTTGTGTGTGTGTGTGTTTTGCAGCTGCACAAGGAGTCCCCGCTCGGGTTCAAGGAGCTGGAGTGGTTCACCGACATCGACCTCTTCCACGAGCAGACGCCGAAAGCCGGCAGGAGATTGGCTGAGGTACCGGAGCTTTCCGGAACCCAGGCCGCGAACGACGCGGCGTACTACAGGCCAGCCAAAGCCACTGCCACTGCCGGCGCCGGGGTGCGCCAGAGCAAGAAGGCCCGGACCGAGGTCACCGACGACGAGGACCACCTCATCGTCCCTGATCTCGGCTAAAATAAAAGAAAGGGCAGGAGTTTTGTTTCTTCTCCTGCTGTGTGTACAACCAGTGTCGTGTCGTGCATCTTTGACTGTAGTATTGCACAGCTGTGAACATGATAACTCTAAGCACACTTTGTGTCTTTGTTGCTACGCTAGTCTATACTATACTTAAAGCACCAGTTTCAACGGTCGTC
Zm00001d051018_T001 from maize genome v4
Amino Acid Sequence
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SSLPPSLLIASWAWEYRPQTERWSGHEDPVRRVRGRGCHRGVLRRRRAVTPATPTTTPTTTPRPRPPSPPRRSRCPRRRS
SCHRAGPSTSSCSSPTASPATSCTRSPRSGSRSWSGSPTSTSSTSRRRKPAGDWLRYRSFPEPRPRTTRRTTGQPKPLPL
PAPGCARARRPGPRSPTTRTTSSSLISAKIKERAGVLFLLLLCVQPVSCRASLTVVLHSCEHDNSKHTLCLCCYASLYYT
Nucleotide Sequence
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TCGTCCTTGCCTCCCTCGTTGTTGA...
TCGTCCTTGCCTCCCTCGTTGTTGATAGCGAGCTGGGCCTGGGAGTATAGACCGCAGACAGAGAGGTGGAGCGGCCATGAAGATCCAGTGCGACGCGTGCGAGGGCGCGGCTGCCACCGTGGTGTGCTGCGCCGACGACGTGCAGTGACGCCTGCGACGCCCACGACGACTCCGACCACCACGCCCCGCCCAAGGCCGCCGTCTCCTCCGCGGCGCAGCAGGTGCCCTCGCCGCCGCAGTTCCTGCCACAGGGCTGGGCCGTCGACGAGCTCCTGCAGTTCTCCGACTGCGAGTCCAGCGACAAGCTGCACAAGGAGTCCCCGCTCGGGTTCAAGGAGCTGGAGTGGTTCACCGACATCGACCTCTTCCACGAGCAGACGCCGAAAGCCGGCAGGAGATTGGCTGAGGTACCGGAGCTTTCCGGAACCCAGGCCGCGAACGACGCGGCGTACTACAGGCCAGCCAAAGCCACTGCCACTGCCGGCGCCGGGGTGCGCCAGAGCAAGAAGGCCCGGACCGAGGTCACCGACGACGAGGACCACCTCATCGTCCCTGATCTCGGCTAAAATAAAAGAAAGGGCAGGAGTTTTGTTTCTTCTCCTGCTGTGTGTACAACCAGTGTCGTGTCGTGCATCTTTGACTGTAGTATTGCACAGCTGTGAACATGATAACTCTAAGCACACTTTGTGTCTTTGTTGCTACGCTAGTCTATACTATACTTAAAGCACCAGTTTCAACGGTCGTCATGCGTCATTTT
Zm00001d051018_T002 from maize genome v4
Amino Acid Sequence
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MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSASLPRCDVCQEKAAFIFCVEDRALFCRDC
DEPIHVPGTLSGNHQRYLATDIRVGFASASSACSDACDAHDDSDHHAPPKAAVSSAAQQVPSPPQFLPQGWAVDELLQFS
DCESSDKLHKESPLGFKELEWFTDIDLFHEQTPKAGRRLAEVPELSGTQAANDAAYYRPAKATATAGAGVRQSKKARTEV
TDDEDHLIVPDLG
Nucleotide Sequence
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TCGTCCTTGCCTCCCTCGTTGTTGA...
TCGTCCTTGCCTCCCTCGTTGTTGATAGCGAGCTGGGCCTGGGAGTATAGACCGCAGACAGAGAGGTGGAGCGGCCATGAAGATCCAGTGCGACGCGTGCGAGGGCGCGGCTGCCACCGTGGTGTGCTGCGCCGACGAGGCCGCGCTGTGCGCGCGCTGCGACGTCGAGATCCACGCCGCCAACAAGCTCGCCAGCAAGCACCAGCGCCTCCCGCTCGAGGCTCTCTCCGCCAGCCTCCCGCGCTGCGACGTCTGCCAGGAGAAAGCGGCGTTCATCTTCTGCGTGGAGGACCGGGCGCTCTTCTGCCGGGACTGCGACGAGCCCATCCACGTCCCGGGCACGCTCTCCGGGAACCACCAGCGCTACCTCGCCACCGACATCCGCGTCGGCTTCGCCTCCGCTTCGTCAGCGTGCAGTGACGCCTGCGACGCCCACGACGACTCCGACCACCACGCCCCGCCCAAGGCCGCCGTCTCCTCCGCGGCGCAGCAGGTGCCCTCGCCGCCGCAGTTCCTGCCACAGGGCTGGGCCGTCGACGAGCTCCTGCAGTTCTCCGACTGCGAGTCCAGCGACAAGCTGCACAAGGAGTCCCCGCTCGGGTTCAAGGAGCTGGAGTGGTTCACCGACATCGACCTCTTCCACGAGCAGACGCCGAAAGCCGGCAGGAGATTGGCTGAGGTACCGGAGCTTTCCGGAACCCAGGCCGCGAACGACGCGGCGTACTACAGGCCAGCCAAAGCCACTGCCACTGCCGGCGCCGGGGTGCGCCAGAGCAAGAAGGCCCGGACCGAGGTCACCGACGACGAGGACCACCTCATCGTCCCTGATCTCGGCTAAAATAAAAGAAAGGGCAGGAGTTTTGTTTCTTCTCCTGCTGTGTGTACAACCAGTGTCGTGTCGTGCATCTTTGACTGTAGTATTGCACAGCTGTGAACATGATAACTCTAAGCACACTTTGTGTCTTTGTTGCTACGCTAGTCTATACTATACTTAAAGCAC
Zm00001d051018_T003 from maize genome v4
Amino Acid Sequence
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MKIQCDACEGAAATVVCCADEAALCARCDVEIHAANKLASKHQRLPLEALSASLPRCDVCQEKAAFIFCVEDRALFCRDC
DEPIHVPGTLSGNHQRYLATDIRVGFASASSACSDACDAHDDSDHHAPPKAAVSSAAQQLHKESPLGFKELEWFTDIDLF
HEQTPKAGRRLAEVPELSGTQAANDAAYYRPAKATATAGAGVRQSKKARTEVTDDEDHLIVPDLG
Nucleotide Sequence
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ATGAAGATCCAGTGCGACGCGTGCG...
ATGAAGATCCAGTGCGACGCGTGCGAGGGCGCGGCTGCCACCGTGGTGTGCTGCGCCGACGAGGCCGCGCTGTGCGCGCGCTGCGACGTCGAGATCCACGCCGCCAACAAGCTCGCCAGCAAGCACCAGCGCCTCCCGCTCGAGGCTCTCTCCGCCAGCCTCCCGCGCTGCGACGTCTGCCAGGAGAAAGCGGCGTTCATCTTCTGCGTGGAGGACCGGGCGCTCTTCTGCCGGGACTGCGACGAGCCCATCCACGTCCCGGGCACGCTCTCCGGGAACCACCAGCGCTACCTCGCCACCGACATCCGCGTCGGCTTCGCCTCCGCTTCGTCAGCGTGCAGTGACGCCTGCGACGCCCACGACGACTCCGACCACCACGCCCCGCCCAAGGCCGCCGTCTCCTCCGCGGCGCAGCAGCTGCACAAGGAGTCCCCGCTCGGGTTCAAGGAGCTGGAGTGGTTCACCGACATCGACCTCTTCCACGAGCAGACGCCGAAAGCCGGCAGGAGATTGGCTGAGGTACCGGAGCTTTCCGGAACCCAGGCCGCGAACGACGCGGCGTACTACAGGCCAGCCAAAGCCACTGCCACTGCCGGCGCCGGGGTGCGCCAGAGCAAGAAGGCCCGGACCGAGGTCACCGACGACGAGGACCACCTCATCGTCCCTGATCTCGGCTAA
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